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BioC 3.0: INSTALL report for DNAcopy on moscato1

This page was generated on 2015-04-10 09:43:25 -0700 (Fri, 10 Apr 2015).

Package 248/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.40.0
Venkatraman E. Seshan
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/DNAcopy
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: DNAcopy
Version: 1.40.0
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/DNAcopy_1.40.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DNAcopy_1.40.0.tar.gz && rm DNAcopy_1.40.0.tar.gz
StartedAt: 2015-04-09 17:23:17 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:24:15 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 57.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/DNAcopy_1.40.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch DNAcopy_1.40.0.tar.gz && rm DNAcopy_1.40.0.tar.gz
###
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100  115k  100  115k    0     0  10.8M      0 --:--:-- --:--:-- --:--:-- 37.7M

install for i386

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'DNAcopy' ...
** libs
gfortran -m32     -O3  -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
gfortran -m32     -O3  -mtune=core2 -c cbststats.f -o cbststats.o
gfortran -m32     -O3  -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -m32     -O3  -mtune=core2 -c changepoints.f -o changepoints.o
gfortran -m32     -O3  -mtune=core2 -c esegment.f -o esegment.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
gfortran -m32     -O3  -mtune=core2 -c getbdry.f -o getbdry.o
gfortran -m32     -O3  -mtune=core2 -c prune.f -o prune.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
gfortran -m32     -O3  -mtune=core2 -c segmentp.f -o segmentp.o
gfortran -m32     -O3  -mtune=core2 -c smoothCNA.f -o smoothCNA.o
gfortran -m32     -O3  -mtune=core2 -c tailprobs.f -o tailprobs.o
gcc -m32 -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/DNAcopy/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'DNAcopy' ...
** libs
gfortran -m64     -O2  -mtune=core2 -c cbsWtstats.f -o cbsWtstats.o
gfortran -m64     -O2  -mtune=core2 -c cbststats.f -o cbststats.o
gfortran -m64     -O2  -mtune=core2 -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -m64     -O2  -mtune=core2 -c changepoints.f -o changepoints.o
gfortran -m64     -O2  -mtune=core2 -c esegment.f -o esegment.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c flchoose.c -o flchoose.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fphyper.c -o fphyper.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c fpnorm.c -o fpnorm.o
gfortran -m64     -O2  -mtune=core2 -c getbdry.f -o getbdry.o
gfortran -m64     -O2  -mtune=core2 -c prune.f -o prune.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rshared.c -o rshared.o
gfortran -m64     -O2  -mtune=core2 -c segmentp.f -o segmentp.o
gfortran -m64     -O2  -mtune=core2 -c smoothCNA.f -o smoothCNA.o
gfortran -m64     -O2  -mtune=core2 -c tailprobs.f -o tailprobs.o
gcc -m64 -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/DNAcopy/libs/x64
** testing if installed package can be loaded
* DONE (DNAcopy)