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BioC 3.0: BUILD BIN report for DESeq2 on oaxaca

This page was generated on 2015-04-10 10:06:55 -0700 (Fri, 10 Apr 2015).

Package 238/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq2 1.6.3
Michael Love
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/DESeq2
Last Changed Rev: 97702 / Revision: 102249
Last Changed Date: 2014-12-16 12:26:29 -0800 (Tue, 16 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]

Summary

Package: DESeq2
Version: 1.6.3
Command: rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq2_1.6.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq2.buildbin-libdir
StartedAt: 2015-04-10 04:32:27 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 04:33:04 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 37.2 seconds
RetCode: 0
Status:  OK 
PackageFile: DESeq2_1.6.3.tgz
PackageFileSize: 1.294 MiB

Command output

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###
### Running command:
###
###   rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq2_1.6.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq2.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq2.buildbin-libdir DESeq2_1.6.3.tar.gz'
>>>>>>> 

* installing *source* package ‘DESeq2’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c DESeq2.cpp -o DESeq2.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DESeq2.so DESeq2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"