Package: ind1KG

Version: 0.1.12

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ind1KG_0.1.12.tar.gz

StartedAt: 2012-03-23 14:06:33 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 14:11:26 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 293.8 seconds

RetCode: 0

Status:  OK

CheckDir: ind1KG.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/ind1KG.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* this is package 'ind1KG' version '0.1.12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ind1KG' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 181.4Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'ind1KG' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ind1KG.Rnw' 
   'nov09rv.Rnw' 
** testing if installed package can be loaded

* DONE (ind1KG)

name	user	system	elapsed
c6snp	17.728	0.504	18.561
gw6c6.snp240	0.306	0.019	0.326
n240	37.098	1.081	38.677
oregdf	0.007	0.001	0.008
pup240_500k	3.705	0.132	3.859
pup240_disc	0.147	0.005	0.152
rsgdf	0.010	0.001	0.011
yri240_6	1.002	0.024	1.043