BioC experimental data: CHECK report for charmData on moscato1

Package: charmData

Version: 0.99.5

Command: rm -rf charmData.buildbin-libdir && mkdir charmData.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=charmData.buildbin-libdir charmData_0.99.5.tar.gz >charmData-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=charmData.buildbin-libdir --install="check:charmData-install.out" --force-multiarch --no-vignettes --timings charmData_0.99.5.tar.gz && mv charmData.buildbin-libdir/* charmData.Rcheck/ && rmdir charmData.buildbin-libdir

StartedAt: 2012-03-23 13:50:11 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 13:56:32 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 380.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: charmData.Rcheck

Warnings: 2

Command output

* using log directory 'D:/biocbld/bbs-2.9-data-experiment/meat/charmData.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'charmData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'charmData' version '0.99.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'charmData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 48.6Mb
  sub-directories of 1Mb or more:
    data  48.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  '136421_532.xys' '136421_635.xys' '136600_532.xys' '136600_635.xys'
  '3788602_532.xys' '3788602_635.xys' '3822402_532.xys'
  '3822402_635.xys' '5739902_532.xys' '5739902_635.xys'
  '5875602_532.xys' '5875602_635.xys'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  'D:/biocbld/bbs-2.9-data-experiment/meat/charmData.Rcheck/00check.log'
for details


install for i386

* installing *source* package 'charmData' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================

add DLL for x64

* installing *source* package 'charmData' ...
** testing if installed package can be loaded
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
* MD5 sums
packaged installation of 'charmData' as charmData_0.99.5.zip

* DONE (charmData)

Summary

Command output