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Package 96/514HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.4.0
Stephen Nyangoma
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/clippda
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: clippda
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch clippda_1.4.0.tar.gz
StartedAt: 2012-03-24 00:17:50 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:28:33 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 643.3 seconds
RetCode: 0
Status:  OK 
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/clippda.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely 'inst/CITATION' should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'clippda.Rnw' 
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
ZvaluescasesVcontrolsPlots0.0200.0040.024
ZvaluesfrommultinomPlots1.7240.2532.018
aclinicalProteomicsData-class0.1160.0110.130
aclinicalProteomicsData-methods0.3560.3910.801
betweensampleVariance6.0381.0727.315
checkNo.replicates0.4190.1230.613
clippda-package214.206 36.641257.991
f0.0000.0010.001
fisherInformation0.1550.0140.171
liverRawData0.0320.0020.035
liver_pheno0.0020.0010.003
liverdata6.9481.4328.457
mostSimilarTwo0.0040.0000.005
negativeIntensitiesCorrection2.2560.2922.734
phenoDataFrame0.1200.0150.139
pheno_urine0.0020.0010.003
preProcRepeatedPeakData5.9231.3157.413
proteomicsExprsData0.5580.0900.658
proteomicspData0.1130.0120.125
replicateCorrelations10.843 1.92013.202
sampleClusteredData2.2640.2932.700
sampleSize128.699 22.174154.089
sampleSize3DscatterPlots0.0340.0030.037
sampleSizeContourPlots0.0630.0050.070
sampleSizeParameters63.76410.86575.500
sample_technicalVariance15.957 2.50819.134
spectrumFilter5.7721.2437.310
ztwo000