Package: RedeR

Version: 1.0.14

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RedeR_1.0.14.tar.gz

StartedAt: 2012-03-24 03:38:58 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 03:40:33 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 94.6 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/RedeR.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RedeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RedeR' version '1.0.14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RedeR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.7Mb
  sub-directories of 1Mb or more:
    data   3.2Mb
    doc    1.3Mb
    java   4.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'RedeR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RedeR.Rnw' 
** testing if installed package can be loaded

* DONE (RedeR)

name	user	system	elapsed
PluginBuilder-class	0.002	0.001	0.003
PluginBuilder	0.003	0.000	0.003
RedPort-class	0.001	0.000	0.001
RedPort	0.001	0.000	0.001
RedeR.data	1.119	0.042	1.161
addEdgeBetweenContainers	0.003	0.000	0.003
addEdges	0.001	0.000	0.001
addGraph	0.001	0.000	0.002
addLegend	0.001	0.000	0.001
addNodes	0.001	0.001	0.001
addSeries	0.001	0.000	0.001
addSubgraph	0.001	0.001	0.001
addSubgraph.list	0.001	0.000	0.001
att	0.197	0.009	0.207
calld	0.001	0.000	0.001
cea	1.872	0.289	2.191
deSelectEdges	0.001	0.000	0.001
deSelectGraph	0.001	0.001	0.001
deSelectNodes	0.001	0.000	0.001
deleteEdges	0.001	0.000	0.001
deleteNodes	0.001	0.000	0.001
deletePlugin	0.001	0.000	0.002
deleteSelectedEdges	0.001	0.000	0.001
deleteSelectedNodes	0.001	0.000	0.001
duplicateGraph	0.001	0.000	0.001
dynwin	0.001	0.000	0.000
exitd	0.001	0.001	0.001
getArrowDirection	0.001	0.000	0.001
getContainerComponets	0.002	0.001	0.002
getEdgeColor	0.001	0.000	0.001
getEdgeIDs	0.001	0.000	0.002
getEdgeType	0.001	0.000	0.001
getEdgeWeight	0.001	0.000	0.001
getEdgeWidth	0.001	0.000	0.001
getEdges	0.001	0.001	0.002
getGraph	0.001	0.000	0.001
getNodeAliases	0.001	0.000	0.001
getNodeBend	0.000	0.000	0.001
getNodeColor	0.001	0.000	0.001
getNodeFontColor	0.001	0.001	0.001
getNodeFontName	0.001	0.000	0.002
getNodeFontSize	0.001	0.000	0.001
getNodeFontStyle	0.001	0.000	0.001
getNodeFontX	0.001	0.000	0.001
getNodeFontY	0.001	0.000	0.001
getNodeH	0.001	0.000	0.001
getNodeIDs	0.001	0.000	0.002
getNodeLineColor	0.001	0.000	0.001
getNodeLineWidth	0.001	0.001	0.001
getNodeShape	0.001	0.000	0.002
getNodeSize	0.000	0.001	0.001
getNodeW	0.001	0.000	0.002
getNodeWeight	0.001	0.001	0.001
getNodeX	0.001	0.001	0.001
getNodeY	0.001	0.000	0.002
getNodes	0.001	0.001	0.001
getSourceEdgeIDs	0.001	0.000	0.001
getSourceEdges	0.000	0.000	0.001
getTargetEdgeIDs	0.001	0.000	0.001
getTargetEdges	0.001	0.000	0.001
gtoy.rm	0.006	0.000	0.019
isDynamicsActive	0.001	0.001	0.001
mergeNodes	0.001	0.000	0.002
mergeOutEdges	0.001	0.000	0.002
nestNodes	0.002	0.000	0.002
nesthc	0.007	0.001	0.007
ping	0.001	0.000	0.001
pluginParser	0.000	0.001	0.000
relax	0.001	0.000	0.002
resetd	0.001	0.000	0.001
selectAllEdges	0.000	0.000	0.002
selectAllNodes	0.001	0.000	0.002
selectEdges	0.001	0.000	0.001
selectGraph	0.001	0.000	0.001
selectNodes	0.001	0.001	0.001
setArrowDirection	0.001	0.000	0.001
setEdgeColor	0.001	0.001	0.001
setEdgeType	0.001	0.000	0.001
setEdgeWeight	0.001	0.000	0.001
setEdgeWidth	0.001	0.000	0.001
setNodeAliases	0.001	0.000	0.001
setNodeBend	0.001	0.000	0.001
setNodeColor	0.001	0.000	0.001
setNodeFontColor	0.001	0.001	0.001
setNodeFontName	0.001	0.000	0.001
setNodeFontSize	0.001	0.001	0.001
setNodeFontStyle	0.001	0.000	0.001
setNodeFontXY	0.001	0.000	0.001
setNodeLineColor	0.001	0.000	0.001
setNodeLineWidth	0.001	0.000	0.001
setNodeShape	0.001	0.000	0.001
setNodeSize	0.001	0.000	0.002
setNodeWeight	0.001	0.000	0.001
setNodeXY	0.001	0.001	0.002
subg	0.305	0.018	0.325
submitPlugin	0.001	0.001	0.001
updateContainerSize	0.001	0.000	0.001
updateGraph	0.001	0.001	0.001
updatePlugins	0.001	0.000	0.002
version	0.001	0.000	0.001