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Package 357/516HostnameOS / ArchBUILDCHECKBUILD BIN
PAnnBuilder 1.18.0
Li Hong
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/PAnnBuilder
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: PAnnBuilder
Version: 1.18.0
Command: chmod a+r PAnnBuilder -R && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PAnnBuilder
StartedAt: 2012-01-08 22:50:21 -0800 (Sun, 08 Jan 2012)
EndedAt: 2012-01-08 22:53:58 -0800 (Sun, 08 Jan 2012)
EllapsedTime: 216.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'PAnnBuilder/DESCRIPTION' ... OK
* preparing 'PAnnBuilder':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: RSQLite
Loading required package: DBI
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
trying URL 'http://gpcr2.biocomp.unibo.it/bacello/dataset.htm'
Content type 'text/html; charset=iso-8859-1' length 4516 bytes
opened URL
downloaded 954 bytes

Warning in download.file(paste(.srcUrls("BaCelLo"), "dataset.htm", sep = "/"),  :
  downloaded length 954 != reported length 4516
Warning in readLines(tmpFile) :
  incomplete final line found on 'D:\biocbld\bbs-2.9-bioc\tmpdir\RtmpsjCk2k\file12c017564125'
Warning in download.file(srcUrl, fileName, method = "internal", mode = "wb",  :
  unable to connect to 'gpcr2.biocomp.unibo.it' on port 80.

Error: processing vignette 'PAnnBuilder.Rnw' failed with diagnostics:
 chunk 12 (label = subcellBaseBuilder) 
Error in loadFromUrl(srcUrls[x]) : 
  URL http://gpcr2.biocomp.unibo.it/bacello/datasets/animals_dataset.zip is incorrect or the target site is not responding!
Execution halted