HilbertVisGUI 1.12.1
Simon Anders
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 61745 / Revision: 64395 | | Last Changed Date: 2012-01-03 12:53:52 -0800 (Tue, 03 Jan 2012) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.12.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package 'HilbertVisGUI' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O3 -Wall -std=gnu99 -mtune=core2 -c R_env_prot.c -o R_env_prot.o
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -mtune=core2 -c R_interface.cc -o R_interface.o
In file included from D:/biocbld/BBS-2˜1.9-B/R/include/R.h:44:0,
from R_interface.cc:17:
D:/biocbld/BBS-2˜1.9-B/R/include/R_ext/RS.h:43:0: warning: "ERROR" redefined [enabled by default]
c:\rtools215\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
R_interface.cc: In function 'RDataVector<double>* create_normal_or_Rle_RDataVector(SEXP, long int, binning_mode)':
R_interface.cc:431:1: warning: control reaches end of non-void function [-Wreturn-type]
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:143:32: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:204:29: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -mtune=core2 -c colorizers.cc -o colorizers.o
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -mtune=core2 -c display.cc -o display.o
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -mtune=core2 -c ruler.cc -o ruler.o
g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -mms-bitfields -Ic:/gtkmm/include/gtkmm-2.4 -Ic:/gtkmm/lib/gtkmm-2.4/include -Ic:/gtkmm/include/atkmm-1.6 -Ic:/gtkmm/include/giomm-2.4 -Ic:/gtkmm/lib/giomm-2.4/include -Ic:/gtkmm/include/pangomm-1.4 -Ic:/gtkmm/lib/pangomm-1.4/include -Ic:/gtkmm/include/gtk-2.0 -Ic:/gtkmm/include/gdkmm-2.4 -Ic:/gtkmm/lib/gdkmm-2.4/include -Ic:/gtkmm/include/atk-1.0 -Ic:/gtkmm/include/glibmm-2.4 -Ic:/gtkmm/lib/glibmm-2.4/include -Ic:/gtkmm/include/glib-2.0 -Ic:/gtkmm/lib/glib-2.0/include -Ic:/gtkmm/include/sigc++-2.0 -Ic:/gtkmm/lib/sigc++-2.0/include -Ic:/gtkmm/include/cairomm-1.0 -Ic:/gtkmm/lib/cairomm-1.0/include -Ic:/gtkmm/include/pango-1.0 -Ic:/gtkmm/include/cairo -Ic:/gtkmm/include -Ic:/gtkmm/include/freetype2 -Ic:/gtkmm/include/libpng14 -Ic:/gtkmm/lib/gtk-2.0/include -Ic:/gtkmm/include/gdk-pixbuf-2.0 -DSO_NAME=HilbertVisGUI -DMSWINDOWS -O2 -Wall -mtune=core2 -c window.cc -o window.o
g++ -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -Lc:/gtkmm/lib -Lc:/devel/dist/win32/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/HilbertVisGUI.Rcheck/HilbertVisGUI/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'HilbertVisGUI.Rnw'
** testing if installed package can be loaded
* DONE (HilbertVisGUI)