| Back to the "Multiple platform build/check report" | A [B] C D E F G H I J K L M N O P Q R S T U V W X Y Z |
| Package 55/516 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| BGmix 1.14.0 Alex Lewin
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |||||
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK | |||||
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: BGmix |
| Version: 1.14.0 |
| Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings BGmix_1.14.0.tar.gz |
| StartedAt: 2012-02-29 01:37:07 -0800 (Wed, 29 Feb 2012) |
| EndedAt: 2012-02-29 01:41:31 -0800 (Wed, 29 Feb 2012) |
| EllapsedTime: 264.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BGmix.Rcheck |
| Warnings: 0 |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/BGmix.Rcheck' * using R version 2.14.1 (2011-12-22) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'BGmix/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BGmix' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'BGmix' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... NOTE File 'D:/biocbld/bbs-2.9-bioc/meat/BGmix.Rcheck/BGmix/libs/i386/BGmix.dll': Found '_assert', possibly from 'assert' (C) Compiled code should not call functions which might terminate R nor write to stdout/stderr instead of to the console. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK
BGmix.Rcheck/00install.out:
* installing *source* package 'BGmix' ... ** libs g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I ../boostIncl -I"d:/RCompile/CRANpkg/extralibs/local/include" -DUSING_R -O2 -Wall -mtune=core2 -c BGmix_main.cpp -o BGmix_main.o BGmix_main.cpp: In function 'void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)': BGmix_main.cpp:165:31: warning: suggest parentheses around comparison in operand of '&' BGmix_main.cpp:178:27: warning: suggest parentheses around comparison in operand of '&' BGmix_main.cpp:179:47: warning: suggest parentheses around comparison in operand of '&' BGmix_main.cpp:546:48: warning: suggest parentheses around comparison in operand of '|' BGmix_main.cpp:621:48: warning: suggest parentheses around comparison in operand of '|' g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I ../boostIncl -I"d:/RCompile/CRANpkg/extralibs/local/include" -DUSING_R -O2 -Wall -mtune=core2 -c rundir.cpp -o rundir.o g++ -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I ../boostIncl -I"d:/RCompile/CRANpkg/extralibs/local/include" -DUSING_R -O2 -Wall -mtune=core2 -c updates_BGmix.cpp -o updates_BGmix.o updates_BGmix.cpp: In function 'void update_z_beta1_joint2(int*, double**, int*, int&, int&, double*, double&, double&, double**, double**, double**, int*, double**, double**, int&, int&, int&, int*, int&, int&, int&, Random&)': updates_BGmix.cpp:192:29: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:200:28: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp: In function 'void predict(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double**, double*, double**, double**, double**, double**, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)': updates_BGmix.cpp:870:41: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:883:46: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:883:67: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:893:43: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp: In function 'void predict_t(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)': updates_BGmix.cpp:992:41: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:1005:46: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:1005:67: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:1015:43: warning: suggest parentheses around comparison in operand of '|' g++ -shared -s -static-libgcc -o BGmix.dll tmp.def BGmix_main.o rundir.o updates_BGmix.o -Ld:/RCompile/CRANpkg/extralibs/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR installing to D:/biocbld/bbs-2.9-bioc/meat/BGmix.Rcheck/BGmix/libs/i386 ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... *** tangling vignette sources ... 'BGmix.Rnw' ** testing if installed package can be loaded * DONE (BGmix)
BGmix.Rcheck/BGmix-Ex.timings:
| name | user | system | elapsed | |
| BGmix-package | 17.44 | 0.10 | 17.94 | |
| BGmix | 42.06 | 0.32 | 48.90 | |
| EstimatePi0 | 9.88 | 0.07 | 10.26 | |
| FDRforTailPP | 18.01 | 0.46 | 18.81 | |
| FDRplotTailPP | 9.18 | 0.18 | 9.60 | |
| TailPP | 9.17 | 0.12 | 9.44 | |
| calcFDR | 4.88 | 0.00 | 5.10 | |
| ccParams | 5.28 | 0.05 | 5.55 | |
| ccPred | 4.49 | 0.03 | 4.62 | |
| ccSummary | 4.52 | 0.01 | 5.33 | |
| ccTrace | 5.82 | 0.08 | 6.15 | |
| histTailPP | 11.28 | 0.20 | 11.54 | |
| plotBasic | 4.98 | 0.08 | 6.74 | |
| plotCompare | 0.01 | 0.00 | 0.02 | |
| plotFDR | 4.51 | 0.03 | 4.59 | |
| plotMixDensity | 17.14 | 0.11 | 21.11 | |
| plotPredChecks | 4.55 | 0.03 | 5.18 | |
| plotTrace | 5.04 | 0.08 | 6.29 | |