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Package 10/479HostnameOS / ArchBUILDCHECKBUILD BIN
ADaCGH2 1.3.0
Ramon Diaz-Uriarte
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ADaCGH2
Last Changed Rev: 56008 / Revision: 56603
Last Changed Date: 2011-06-06 03:29:55 -0700 (Mon, 06 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 [ ERROR ] skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: ADaCGH2
Version: 1.3.0
Command: chmod a+r ADaCGH2 -R && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ADaCGH2
StartedAt: 2011-07-07 00:39:08 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 00:39:16 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 8.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'ADaCGH2/DESCRIPTION' ... OK
* preparing 'ADaCGH2':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package 'ADaCGH2' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65:12: warning: unused variable 'totalNorm'
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:152:8: warning: "/*" within comment
r_haarseg.c:176:8: warning: "/*" within comment
r_haarseg.c:128:9: warning: unused variable 'j'
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:59:12: warning: 'lowWeightSum' may be used uninitialized in this function
r_haarseg.c:60:12: warning: 'highWeightSum' may be used uninitialized in this function
r_haarseg.c:63:12: warning: 'lowNonNormed' may be used uninitialized in this function
r_haarseg.c:64:12: warning: 'highNonNormed' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o ADaCGH2.dll tmp.def r_haarseg.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/tmpdir/Rtmp2RAMEd/Rinst4fe27f5a/ADaCGH2/libs/x64
** R
Error in parse(outFile) : 
  D:/biocbld/bbs-2.9-bioc/tmpdir/Rtmp2RAMEd/Rbuild41da5487/ADaCGH2/R/ADaCGH-2.R:2851:44: unexpected '||'
2850:   ## Improved as per Duncan Murdoch's suggestion, email 2011-05-28
2851:   if(any(is.na(x)) || any(is.infinite(x))) ||
                                                 ^
ERROR: unable to collate and parse R files for package 'ADaCGH2'
* removing 'D:/biocbld/bbs-2.9-bioc/tmpdir/Rtmp2RAMEd/Rinst4fe27f5a/ADaCGH2'
      -----------------------------------
ERROR: package installation failed