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Package 78/462HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.17.0
Florian Hahne
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS2
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.17.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings cellHTS2_2.17.0.tar.gz
StartedAt: 2011-05-09 11:50:40 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 11:54:33 -0700 (Mon, 09 May 2011)
EllapsedTime: 232.4 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/cellHTS2.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.17.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    KcViab   2.0Mb
    data     1.2Mb
    doc      1.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘cellhts2.Rnw’ 
   ‘cellhts2Complete.Rnw’ 
   ‘twoChannels.Rnw’ 
   ‘twoWay.Rnw’ 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.0960.0122.108
ROC-class0.5120.0080.519
ROC1.3160.0081.325
annotate0.9280.0080.935
bdgpbiomart0.4280.0000.427
buildCellHTS20.2840.0080.296
cellHTS-class0.9680.0240.993
configurationAsScreenPlot0.9560.0080.965
configure0.7640.0040.771
convertOldCellHTS1.1600.0001.163
convertWellCoordinates000
data-KcViab0.1000.0000.102
data-KcViabSmall0.0200.0000.022
data-dualCh0.0320.0000.029
data-oldKcViabSmall0.0080.0000.009
getDynamicRange0.9250.0000.922
getEnVisionRawData0.0360.0000.037
getMeasureRepAgreement0.5920.0040.595
getTopTable1.1960.0081.201
getZfactor0.3760.0000.379
imageScreen1.1920.0041.229
normalizePlates1.4800.0001.513
oneRowPerId0.0000.0000.004
plotSpatialEffects1.2600.0001.292
readHTAnalystData1.1920.0041.194
readPlateList0.8120.0040.822
scoreReplicates1.0560.0001.057
scores2calls1.1240.0001.124
setSettings0.0000.0080.007
spatialNormalization1.4440.0041.448
summarizeChannels2.0840.0002.090
summarizeReplicates1.0080.0001.059
templateDescriptionFile0.0040.0000.001
updateCellHTS0.020.000.02
write.tabdel0.0240.0000.022
writeReport0.0040.0000.009
writeTab0.0160.0000.018