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Package 458/462HostnameOS / ArchBUILDCHECKBUILD BIN
XDE 1.13.0
Robert Scharpf
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/XDE
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: XDE
Version: 1.13.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --library=XDE.buildbin-libdir XDE_1.13.0.tar.gz
StartedAt: 2011-05-09 16:36:10 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 16:36:45 -0700 (Mon, 09 May 2011)
EllapsedTime: 35.1 seconds
RetCode: 0
Status:  OK  
PackageFile: XDE_1.13.0.zip
PackageFileSize: 3 MiB

Command output

* installing *source* package 'XDE' ...
** libs
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c Cholesky.cpp -o Cholesky.o
Cholesky.cpp: In constructor 'Cholesky::Cholesky(const std::vector<std::vector<double> >&, int&)':
Cholesky.cpp:21:21: warning: comparison between signed and unsigned integer expressions
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c Matrix.cpp -o Matrix.o
Matrix.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix.cpp:142:7: warning: unused variable 'k'
Matrix.cpp:144:9: warning: unused variable 'j'
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c Random.cpp -o Random.o
Random.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random.cpp:156:29: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double> > Random::InverseWishart(double, const std::vector<std::vector<double> >&)':
Random.cpp:433:26: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishart(int, double)':
Random.cpp:507:26: warning: comparison between signed and unsigned integer expressions
Random.cpp:510:33: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random.cpp:916:29: warning: comparison between signed and unsigned integer expressions
Random.cpp: In member function 'double Random::lnGamma(double)':
Random.cpp:941:10: warning: unused variable 'x'
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c Structure.cpp -o Structure.o
In file included from c:\rtools213\mingw\bin\../lib/gcc/mingw32/4.5.0/include/c++/backward/strstream:47:0,
                 from Structure.cpp:1:
c:\rtools213\mingw\bin\../lib/gcc/mingw32/4.5.0/include/c++/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector<Potential*>&)':
ReportPotential.h:32:30: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:30: warning: comparison between signed and unsigned integer expressions
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:34: warning: comparison between signed and unsigned integer expressions
ReportPotential.h:78:34: warning: comparison between signed and unsigned integer expressions
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:31: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:31: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:35: warning: comparison between signed and unsigned integer expressions
ReportAcceptance.h:76:35: warning: comparison between signed and unsigned integer expressions
In file included from ReportProbDelta.h:9:0,
                 from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)':
ReportProbDelta.h:53:33: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:33: warning: comparison between signed and unsigned integer expressions
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:30: warning: comparison between signed and unsigned integer expressions
Structure.cpp: In member function 'void Structure::setInitialValues(std::string&)':
Structure.cpp:1102:31: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1106:28: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1109:28: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1121:33: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1125:30: warning: comparison between signed and unsigned integer expressions
Structure.cpp:1128:30: warning: comparison between signed and unsigned integer expressions
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:13:0:
Random.h:19:0: warning: "PI" redefined
E:/biocbld/bbs-2.9-bioc/R/include/R_ext/Constants.h:30:0: note: this is the location of the previous definition
In file included from diffExpressed_main.cpp:19:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:30: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:30: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:28:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:30: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:30: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:29:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:30: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:30: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:30:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:38:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:33: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:30: warning: comparison between signed and unsigned integer expressions
In file included from UpdateSigma2MH.h:4:0,
                 from diffExpressed_main.cpp:40:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:30: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53:33: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:33: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:30: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:34: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:40:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:28: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:27: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:27: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:27: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:41:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:33: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:27: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:27: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:42:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:33: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:27: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:27: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:27: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:43:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:28: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:27: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:27: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:27: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:44:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:33: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:27: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:27: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:45:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:33: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:27: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:27: warning: comparison between signed and unsigned integer expressions
In file included from diffExpressed_main.cpp:140:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:27: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:199:30: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:214:34: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:221:33: warning: comparison between signed and unsigned integer expressions
diffExpressed_main.cpp:224:33: warning: comparison between signed and unsigned integer expressions
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c main.cpp -o main.o
In file included from main.cpp:21:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:30: warning: comparison between signed and unsigned integer expressions
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:30: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:30:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:30: warning: comparison between signed and unsigned integer expressions
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:30: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:31:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:30: warning: comparison between signed and unsigned integer expressions
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:30: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:32:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:29: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:29: warning: comparison between signed and unsigned integer expressions
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:29: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:40:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:33: warning: comparison between signed and unsigned integer expressions
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:30: warning: comparison between signed and unsigned integer expressions
In file included from UpdateSigma2MH.h:4:0,
                 from main.cpp:42:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:30: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:53:33: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:33: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:30: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:127:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:130:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h:162:34: warning: comparison between signed and unsigned integer expressions
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:34: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:42:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:28: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:27: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:27: warning: comparison between signed and unsigned integer expressions
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:27: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:43:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:33: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:27: warning: comparison between signed and unsigned integer expressions
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:27: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:44:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:33: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:27: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:27: warning: comparison between signed and unsigned integer expressions
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:27: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:45:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:28: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:27: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:27: warning: comparison between signed and unsigned integer expressions
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:27: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:46:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:33: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:27: warning: comparison between signed and unsigned integer expressions
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:27: warning: comparison between signed and unsigned integer expressions
In file included from main.cpp:47:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:33: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:27: warning: comparison between signed and unsigned integer expressions
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:27: warning: comparison between signed and unsigned integer expressions
main.cpp: In function 'int main(int, char**)':
main.cpp:163:29: warning: comparison between signed and unsigned integer expressions
main.cpp:387:35: warning: comparison between signed and unsigned integer expressions
main.cpp:401:32: warning: comparison between signed and unsigned integer expressions
main.cpp:406:31: warning: comparison between signed and unsigned integer expressions
main.cpp:409:31: warning: comparison between signed and unsigned integer expressions
g++ -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix.o Random.o Structure.o diffExpressed_main.o main.o -lm -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/XDE.buildbin-libdir/XDE/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "pairs" in "XDE"
Creating a new generic function for "lapply" in "XDE"
Creating a new generic function for "nrow" in "XDE"
Creating a new generic function for "plot" in "XDE"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'XDE.Rnw' 
   'XdeParameterClass.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XDE' as XDE_1.13.0.zip

* DONE (XDE)