Package: SQUADD

Version: 1.3.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings SQUADD_1.3.0.tar.gz

StartedAt: 2011-05-09 20:19:54 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 20:20:46 -0700 (Mon, 09 May 2011)

EllapsedTime: 52.8 seconds

RetCode: 0

Status:  OK

CheckDir: SQUADD.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/SQUADD.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SQUADD/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SQUADD' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SQUADD' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'SQUADD' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'SQUADD.Rnw' using 'latin1' 
   'SQUADD_ERK.Rnw' using 'latin1' 
** testing if installed package can be loaded

* DONE (SQUADD)

name	user	system	elapsed
SquadSimResServiceImpl-class	0.67	0.00	0.67
getFittedTable	0.16	0.00	0.16
plotCC	0.14	0.00	0.14
plotPredMap	0.14	0.00	0.14
plotSimMatrix	0.25	0.01	0.26