Package: RTCA

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTCA_1.5.0.tar.gz

StartedAt: 2011-05-09 16:53:25 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 16:54:32 -0700 (Mon, 09 May 2011)

EllapsedTime: 67.0 seconds

RetCode: 0

Status:  OK

CheckDir: RTCA.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/RTCA.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTCA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTCA’ version ‘1.5.0’
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RTCA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘aboutRTCA.pdf’ from 627Kb to 259Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘essentials.R’
 OK
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ call not declared from: ‘xtable’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RTCA’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "time" in "RTCA"
Creating a new generic function for "plot" in "RTCA"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘RTCAtransformation.Rnw’ 
   ‘aboutRTCA.Rnw’ 
** testing if installed package can be loaded

* DONE (RTCA)

name	user	system	elapsed
RTCA-class	0.533	0.003	0.537
RTCAtimeline-class	0.003	0.001	0.003
alphaNames	0.009	0.000	0.009
combineRTCA	0.605	0.012	0.617
controlView	0.515	0.011	0.572
derivativeTransform	0.433	0.005	0.438
factor2numeric	0.003	0.000	0.004
interpolationTransform	1.082	0.133	1.226
nearestTimeIndex	0.517	0.017	0.536
parseRTCA	0.465	0.010	0.511
plateView	0.378	0.005	0.384
plotGridEffect	1.081	0.013	1.118
ratioTransform	0.403	0.007	0.426
rgrTransform	1.187	0.025	1.217
sliceRTCA	0.404	0.004	0.409
smoothTransform	0.718	0.006	0.728
spectramaxImport	0.032	0.007	0.236