Package: LiquidAssociation

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch LiquidAssociation_1.7.0.tar.gz

StartedAt: 2011-05-09 15:23:28 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 15:26:12 -0700 (Mon, 09 May 2011)

EllapsedTime: 164.0 seconds

RetCode: 0

Status:  OK

CheckDir: LiquidAssociation.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/LiquidAssociation.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LiquidAssociation/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LiquidAssociation’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘LiquidAssociation’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘LiquidAssociation’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: doBy
Loading required package: survival
Loading required package: splines
Loading required package: R2HTML
Loading required package: multcomp
Loading required package: mvtnorm
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: DBI

Creating a new generic function for "print" in "LiquidAssociation"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘LiquidAssociation.Rnw’ 
** testing if installed package can be loaded

* DONE (LiquidAssociation)

name	user	system	elapsed
CNM-class	0.002	0.000	0.002
CNM.full-methods	0.073	0.003	0.077
CNM.simple-methods	0.059	0.001	0.062
GLA-methods	0.009	0.000	0.010
LA-methods	0.004	0.001	0.005
LiquidAssociation-package	0.060	0.001	0.062
getsGLA-methods	13.387	0.051	13.705
getsLA-methods	9.868	0.025	10.093
plotGLA-methods	0.014	0.001	1.015