Package: DAVIDQuery

Version: 1.13.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings DAVIDQuery_1.13.0.tar.gz

StartedAt: 2011-05-09 13:15:23 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 13:16:00 -0700 (Mon, 09 May 2011)

EllapsedTime: 36.9 seconds

RetCode: 0

Status:  OK

CheckDir: DAVIDQuery.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/DAVIDQuery.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DAVIDQuery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAVIDQuery' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DAVIDQuery' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'DAVIDQuery' ...
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'DAVIDQuery.Rnw' using 'latin-9' 
** testing if installed package can be loaded
This is DAVIDQuery Version  1.13.0   2010-06-10 

* DONE (DAVIDQuery)

name	user	system	elapsed
DAVIDQuery	0.08	0.02	1.64
bracketedStrings	0	0	0
convertIDList	0	0	0
findInBrackets	0	0	0
getAffyChipTypes	0	0	0
getAffyProbesetList	0.19	0.03	6.31
getAnnotationChoices	0	0	0
getIdConversionChoices	0	0	0
requestIDConversion	0	0	0
testGene2Gene	0.05	0.00	2.09
uploadIDList	0	0	0