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| Package 54/462 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| BGmix 1.13.0 Alex Lewin
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |||||
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK | |||||
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D | |||||||
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK | |||||
| Package: BGmix |
| Version: 1.13.0 |
| Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings BGmix_1.13.0.tar.gz |
| StartedAt: 2011-05-09 12:40:39 -0700 (Mon, 09 May 2011) |
| EndedAt: 2011-05-09 12:43:52 -0700 (Mon, 09 May 2011) |
| EllapsedTime: 193.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BGmix.Rcheck |
| Warnings: 0 |
* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/BGmix.Rcheck' * using R version 2.14.0 Under development (unstable) (2011-04-17 r55484) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'BGmix/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BGmix' version '1.13.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'BGmix' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK
BGmix.Rcheck/00install.out:
* installing *source* package 'BGmix' ... ** libs g++ -I"E:/biocbld/BBS-2˜1.9-B/R/include" -I ../boostIncl -DUSING_R -O2 -Wall -c BGmix_main.cpp -o BGmix_main.o BGmix_main.cpp: In function 'void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)': BGmix_main.cpp:165:31: warning: suggest parentheses around comparison in operand of '&' BGmix_main.cpp:178:27: warning: suggest parentheses around comparison in operand of '&' BGmix_main.cpp:179:47: warning: suggest parentheses around comparison in operand of '&' BGmix_main.cpp:546:48: warning: suggest parentheses around comparison in operand of '|' BGmix_main.cpp:621:48: warning: suggest parentheses around comparison in operand of '|' g++ -I"E:/biocbld/BBS-2˜1.9-B/R/include" -I ../boostIncl -DUSING_R -O2 -Wall -c rundir.cpp -o rundir.o g++ -I"E:/biocbld/BBS-2˜1.9-B/R/include" -I ../boostIncl -DUSING_R -O2 -Wall -c updates_BGmix.cpp -o updates_BGmix.o updates_BGmix.cpp: In function 'void update_z_beta1_joint2(int*, double**, int*, int&, int&, double*, double&, double&, double**, double**, double**, int*, double**, double**, int&, int&, int&, int*, int&, int&, int&, Random&)': updates_BGmix.cpp:192:29: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:200:28: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp: In function 'void predict(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double**, double*, double**, double**, double**, double**, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)': updates_BGmix.cpp:870:41: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:883:46: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:883:67: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:893:43: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp: In function 'void predict_t(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)': updates_BGmix.cpp:992:41: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:1005:46: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:1005:67: warning: suggest parentheses around comparison in operand of '|' updates_BGmix.cpp:1015:43: warning: suggest parentheses around comparison in operand of '|' g++ -shared -s -static-libgcc -o BGmix.dll tmp.def BGmix_main.o rundir.o updates_BGmix.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR installing to E:/biocbld/bbs-2.9-bioc/meat/BGmix.Rcheck/BGmix/libs/i386 ** R ** data ** inst ** preparing package for lazy loading KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 ** help *** installing help indices ** building package indices ... *** tangling vignette sources ... 'BGmix.Rnw' ** testing if installed package can be loaded * DONE (BGmix)
BGmix.Rcheck/BGmix-Ex.timings:
| name | user | system | elapsed | |
| BGmix-package | 13.02 | 0.17 | 13.31 | |
| BGmix | 30.62 | 0.16 | 32.00 | |
| EstimatePi0 | 9.05 | 0.20 | 9.38 | |
| FDRforTailPP | 18.41 | 0.46 | 19.23 | |
| FDRplotTailPP | 8.68 | 0.14 | 8.94 | |
| TailPP | 8.77 | 0.21 | 9.33 | |
| calcFDR | 3.28 | 0.07 | 3.56 | |
| ccParams | 3.33 | 0.01 | 3.36 | |
| ccPred | 3.34 | 0.03 | 3.37 | |
| ccSummary | 3.30 | 0.05 | 3.35 | |
| ccTrace | 3.83 | 0.06 | 4.00 | |
| histTailPP | 8.64 | 0.27 | 9.06 | |
| plotBasic | 3.34 | 0.05 | 4.00 | |
| plotCompare | 0.0 | 0.0 | 0.7 | |
| plotFDR | 3.33 | 0.03 | 3.63 | |
| plotMixDensity | 12.58 | 0.15 | 13.06 | |
| plotPredChecks | 3.33 | 0.05 | 3.83 | |
| plotTrace | 4.04 | 0.00 | 4.33 | |