XhybCasneuf 1.0.6
Tineke Casneuf
| Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/XhybCasneuf | | Last Changed Rev: 986 / Revision: 1763 | | Last Changed Date: 2009-09-15 12:41:50 -0700 (Tue, 15 Sep 2009) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'XhybCasneuf/DESCRIPTION' ... OK
* preparing 'XhybCasneuf':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to remove the existing 'INDEX'
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: affy
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Loading required package: ath1121501cdf
Loading required package: tinesath1cdf
Attaching package: 'tinesath1cdf'
The following object(s) are masked from 'package:ath1121501cdf':
i2xy, xy2i
Loading required package: RColorBrewer
Loading required package: grid
Plot background-corrected, normalised expression data of reporters:
- of probe set A -> plot A
- of probe set B -> plot B
- of probe set C -> plot C
Plot median-polish summarised expression data of the three probe sets -> plot D
*** Pearson correlation coefficients between expression values summarised with:
*** median polish ***
corr.: probe sets A and B: -0.0692
corr.: probe sets A and C: 0.731
*** tuckey's biweight ***
corr.: probe sets A and B: -0.223
corr.: probe sets A and C: -0.19
*** dChip ***
corr.: probe sets A and B: 0.296
corr.: probe sets A and C: 0.947
pdflatex Xhyb
This is pdfTeX, Version 3.1415926-1.40.11 (MiKTeX 2.9)
entering extended mode
(D:\biocbld\bbs-2.8-data-experiment\tmpdir\RtmpnRxzsy\Rbuild57464f9\XhybCasneuf
\inst\doc\Xhyb.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, afrikaans, ancientgreek, ar
abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic,
croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga
lician, german, german-x-2009-06-19, greek, gujarati, hindi, hungarian, iceland
ic, indonesian, interlingua, irish, italian, kannada, kurmanji, lao, latin, lat
vian, lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerm
an, ngerman-x-2009-06-19, nynorsk, oriya, panjabi, pinyin, polish, portuguese,
romanian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swis
sgerman, tamil, telugu, turkish, turkmen, ukenglish, ukrainian, uppersorbian, u
senglishmax, welsh, loaded.
pdflatex.exe: Windows API error 5: Access is denied.
pdflatex.exe: Data: cprogramdatamiktex2.9miktexdatale1756f6ade37d5f870f23c05a7f81e257.fndb
make: *** [Xhyb.pdf] Error 1
Error in tools::buildVignettes(dir = ".") : running 'make' failed
Execution halted