Package: rfcdmin

Version: 1.6.11

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings rfcdmin_1.6.11.tar.gz

StartedAt: 2011-10-19 01:17:27 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 01:18:08 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 40.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: rfcdmin.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/rfcdmin.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rfcdmin/DESCRIPTION’ ... OK
* this is package ‘rfcdmin’ version ‘1.6.11’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘rfcdmin’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 28.2Mb
  sub-directories of 1Mb or more:
    fcs    4.4Mb
    data  23.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' calls not declared from:
  MASS rfcprim
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  
  *** Deprecation warning ***:
  The package 'rflowcyt' is deprecated and will not be supported after Bioconductor release 2.4. 
      Similar functionality is provided in packages flowCore and flowViz .
  
  
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/rfcdmin.Rcheck/00check.log’
for details

* installing *source* package ‘rfcdmin’ ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (rfcdmin)

name	user	system	elapsed
FCSRobj.currentmin	0.02	0.00	0.02
FCSRobjmin	0.008	0.004	0.012
MC.053min	0.240	0.004	0.243
PRIM.example.data	0.032	0.000	0.031
PRIM.real.data.min	0.008	0.004	0.011
PerPosROCmin	3.040	0.060	3.102
SEB-NP22.fcs	0.000	0.004	0.000
VRCmin	2.396	0.028	2.425
facscan256.fcs	0.472	0.056	0.530
flowcyt.data	3.260	0.052	3.310
flowcyt.fcs	0.604	0.032	0.639
flowcyt.fluors	2.756	0.260	3.019