Package: dyebiasexamples

Version: 1.0.6

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch dyebiasexamples_1.0.6.tar.gz

StartedAt: 2011-10-19 01:15:15 -0700 (Wed, 19 Oct 2011)

EndedAt: 2011-10-19 01:18:59 -0700 (Wed, 19 Oct 2011)

EllapsedTime: 223.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: dyebiasexamples.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/dyebiasexamples.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'dyebiasexamples/DESCRIPTION' ... OK
* this is package 'dyebiasexamples' version '1.0.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'dyebiasexamples' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 40.3Mb
  sub-directories of 1Mb or more:
    data        5.3Mb
    extradata  34.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  README
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-data-experiment/meat/dyebiasexamples.Rcheck/00check.log'
for details

* installing *source* package 'dyebiasexamples' ...
** R
** data
** inst
** preparing package for lazy loading
Setting options('download.file.method.GEOquery'='curl')
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Setting options('download.file.method.GEOquery'='curl')

* DONE (dyebiasexamples)

name	user	system	elapsed
data.raw	1.687	0.051	1.778
dyebias.geo2marray	0.001	0.000	0.000
dyebias.umcu.proper.estimators	5.047	0.280	5.456