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Package 142/467HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 1.4.0
Sepp Hochreiter
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/fabia
Last Changed Rev: 54808 / Revision: 59457
Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: fabia
Version: 1.4.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch fabia_1.4.0.tar.gz
StartedAt: 2011-10-20 14:57:51 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:58:46 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:  OK  
CheckDir: fabia.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/fabia.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fabia/DESCRIPTION' ... OK
* this is package 'fabia' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'fabia' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

fabia.Rcheck/00install.out:

* installing *source* package 'fabia' ...
Building libRcpp.a in RcppSrc...
rm -f Rcpp.o  libRcpp.a
g++ -c Rcpp.cpp -o Rcpp.o -I"E:/biocbld/BBS-2˜1.8-B/R/include" -I"E:/biocbld/BBS-2˜1.8-B/R/src/include"  -Wall -O2
ar r libRcpp.a Rcpp.o
C:\Rtools214\MinGW\bin\ar.exe: creating libRcpp.a
ranlib libRcpp.a
rm -f Rcpp.o
rm -f Rcpp.o 
** libs
  running src/Makefile.win ...
rm -f fabia.o fabia.dll *.a *.o *.so *.dll
g++ -c fabiac.cpp -o fabia.o -I../RcppSrc -I"E:/biocbld/BBS-2˜1.8-B/R/include" -Wall -O2
g++ -shared -s -static-libgcc fabia.o -L../RcppSrc -lRcpp  -L"E:/biocbld/BBS-2˜1.8-B/R/bin/i386"  -lR  -o fabia.dll 
rm -f fabia.o *.a *.o *.so
installing to E:/biocbld/bbs-2.8-bioc/meat/fabia.Rcheck/fabia/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "fabia"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (fabia)

fabia.Rcheck/fabia-Ex.timings:

nameusersystemelapsed
estimateMode0.040.000.03
extractBic0.120.000.15
extractPlot0.530.000.57
fabi0.440.000.43
fabia0.120.000.13
fabiaDemo000
fabiaVersion000
fabiap0.150.000.14
fabias0.100.000.11
fabiasp0.910.000.92
makeFabiaData0.050.040.20
makeFabiaDataBlocks0.030.050.11
makeFabiaDataBlocksPos0.000.060.10
makeFabiaDataPos0.010.030.12
matrixImagePlot0.040.070.11
mfsc0.140.000.14
nmfdiv0.150.000.16
nmfeu0.110.000.11
nmfsc0.050.000.04
plot-methods0.730.031.00
plotBicluster0.130.010.16
projFunc000
projFuncPos000
show-methods0.150.020.17
showSelected-methods0.150.010.16
summary-methods0.140.000.14