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Package 99/467HostnameOS / ArchBUILDCHECKBUILD BIN
cn.farms 1.0.12
Andreas Mitterecker
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/cn.farms
Last Changed Rev: 57324 / Revision: 59457
Last Changed Date: 2011-08-09 09:17:24 -0700 (Tue, 09 Aug 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: cn.farms
Version: 1.0.12
Command: rm -rf cn.farms.buildbin-libdir && mkdir cn.farms.buildbin-libdir && E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=cn.farms.buildbin-libdir cn.farms_1.0.12.tar.gz
StartedAt: 2011-10-20 17:45:00 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:45:24 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 23.6 seconds
RetCode: 0
Status:  OK  
PackageFile: cn.farms_1.0.12.zip
PackageFileSize: 2.452 MiB

Command output

* installing *source* package 'cn.farms' ...
** libs
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c R_init_cnfarms.c -o R_init_cnfarms.o
g++ -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O2 -Wall  -c laplace.cpp -o laplace.o
laplace.cpp: In function 'SEXPREC* momentsGauss(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
laplace.cpp:420:6: warning: unused variable 'method'
laplace.cpp: In function 'void computeParameters(double, double, double, double, double, double, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&)':
laplace.cpp:197:9: warning: 'I1left' may be used uninitialized in this function
laplace.cpp:198:9: warning: 'I1right' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"          -O3 -Wall  -std=gnu99 -c sparse_farms.c -o sparse_farms.o
sparse_farms.c: In function 'normData':
sparse_farms.c:191:10: warning: unused variable 'k'
sparse_farms.c:191:6: warning: unused variable 'i'
sparse_farms.c: In function 'sparseFarmsC':
sparse_farms.c:262:41: warning: unused variable 'invpPsi'
sparse_farms.c:259:9: warning: unused variable 'sumhelp'
g++ -shared -s -static-libgcc -o cn.farms.dll tmp.def R_init_cnfarms.o laplace.o sparse_farms.o -LE:/biocbld/bbs-2.8-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/cn.farms.buildbin-libdir/cn.farms/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
================================================================================
Welcome to oligoClasses version 1.14.0
================================================================================
Large dataset support for 'oligo/crlmm': Enabled
    - Probesets: 20,000
    - Samples..:    100
    - Path.....: E:/biocbld/bbs-2.8-bioc/tmpdir/RtmpUteERg/R.INSTALL7bee6f2b/cn.farms
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Use options(cluster=makeCluster(...))
================================================================================

**************************************************************************
   The plan to change the data format for CNA object has been postponed   
 in order to ensure backward compatibility with older versions of DNAcopy 
**************************************************************************

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
================================================================================
Welcome to oligoClasses version 1.14.0
================================================================================
Large dataset support for 'oligo/crlmm': Enabled
    - Probesets: 20,000
    - Samples..:    100
    - Path.....: E:/biocbld/bbs-2.8-bioc/tmpdir/RtmpUteERg/R.INSTALL7bee6f2b/cn.farms
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Use options(cluster=makeCluster(...))
================================================================================
* MD5 sums
packaged installation of 'cn.farms' as cn.farms_1.0.12.zip

* DONE (cn.farms)