Package: affyPara

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch affyPara_1.12.0.tar.gz

StartedAt: 2011-10-20 13:14:12 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 13:16:04 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 111.9 seconds

RetCode: 0

Status:  OK

CheckDir: affyPara.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/affyPara.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'affyPara/DESCRIPTION' ... OK
* this is package 'affyPara' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affyPara' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'vsnAddonBoxplots_20-40-60.pdf' from 515Kb to 45Kb
     compacted 'vsnStudy.pdf' from 2094Kb to 317Kb
     compacted 'vsnSubsamplesBoxplot_25.pdf' from 213Kb to 20Kb
     compacted 'vsnSubsamplesBoxplot_50.pdf' from 529Kb to 44Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'affyPara' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (affyPara)

name	user	system	elapsed
MAplotPara	0.000	0.001	0.001
bgcPara	0	0	0
boxplotPara	0.000	0.000	0.001
computeExprSetPara	0.000	0.001	0.001
distributeFiles	0	0	0
mergeSplitObjects	4.745	0.677	5.653
normalizeAffyBatchConstantPara	0.000	0.001	0.000
normalizeAffyBatchInvariantsetPara	0	0	0
normalizeAffyBatchLoessPara	0.000	0.000	0.001
normalizeAffyBatchLoessParaIter	0.001	0.000	0.000
normalizeAffyBatchQuantilesPara	0	0	0
preproPara	0	0	0
qa	0.000	0.000	0.001
readAffybatchPara	0	0	0
removeDistributedFiles	0.000	0.000	0.001
rmaPara	0.001	0.000	0.001
snowReplace	0	0	0
split	2.040	0.447	2.514
vsnPara	0.000	0.000	0.001