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Package 256/444 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
MassArray 1.3.1 Reid F. Thompson
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK | |||||
petty | Mac OS X Snow Leopard (10.6.6) / i386 | OK | [ OK ] | OK |
Package: MassArray |
Version: 1.3.1 |
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MassArray_1.3.1.tar.gz |
StartedAt: 2011-03-17 16:48:37 -0700 (Thu, 17 Mar 2011) |
EndedAt: 2011-03-17 16:49:46 -0700 (Thu, 17 Mar 2011) |
EllapsedTime: 68.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MassArray.Rcheck |
Warnings: 0 |
* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/MassArray.Rcheck' * using R version 2.13.0 Under development (unstable) (2011-03-06 r54683) * using platform: i386-apple-darwin9.8.0 (32-bit) * using session charset: ASCII * using option '--no-vignettes' * checking for file 'MassArray/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MassArray' version '1.3.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'MassArray' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... SKIPPED * checking PDF version of manual ... OK
MassArray.Rcheck/00install.out:
* installing *source* package 'MassArray' ... ** R ** data ** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (MassArray)
MassArray.Rcheck/MassArray-Ex.timings:
name | user | system | elapsed | |
MassArray.example.data | 0.019 | 0.002 | 0.020 | |
MassArrayData-class | 0.001 | 0.000 | 0.002 | |
MassArrayFragment-class | 0.001 | 0.000 | 0.001 | |
MassArrayPeak-class | 0.001 | 0.001 | 0.001 | |
MassArraySpectrum-class | 0.000 | 0.000 | 0.001 | |
ampliconPrediction | 2.463 | 0.005 | 2.469 | |
analyzeCpGs | 0.239 | 0.001 | 0.240 | |
bisConvert | 0.000 | 0.000 | 0.001 | |
calcMW | 0.001 | 0.001 | 0.001 | |
calcMeth | 0.017 | 0.000 | 0.018 | |
calcPercentAdduct | 0.073 | 0.001 | 0.074 | |
calcPercentConversion | 0.051 | 0.000 | 0.052 | |
combine | 4.437 | 0.009 | 4.446 | |
convControl | 0.029 | 0.002 | 0.030 | |
countCGs | 0.000 | 0.000 | 0.001 | |
createWiggle | 0.015 | 0.001 | 0.017 | |
estimatePrimerDimer | 0.085 | 0.003 | 0.088 | |
evaluateSNPs | 29.439 | 0.145 | 29.585 | |
expandSequence | 0.001 | 0.000 | 0.001 | |
findCollisions | 0 | 0 | 0 | |
findFragments | 0.019 | 0.001 | 0.020 | |
findPeaks | 0.000 | 0.000 | 0.001 | |
identifySNPs | 0.031 | 0.001 | 0.032 | |
inSilicoFragmentation | 0.011 | 0.001 | 0.013 | |
isAssayable | 0.001 | 0.000 | 0.000 | |
numCollisions | 0.001 | 0.000 | 0.000 | |
plot.MassArrayData | 0.044 | 0.001 | 0.044 | |
position | 0.020 | 0.001 | 0.021 | |
revComplement | 0.001 | 0.001 | 0.000 | |
rnaDigest | 0.007 | 0.001 | 0.008 | |
samples | 0.033 | 0.001 | 0.034 | |
sum.MassArraySpectrum | 0.663 | 0.004 | 0.667 | |