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Package 181/444HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.17.4
Sean Davis
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GEOquery
Last Changed Rev: 52639 / Revision: 53825
Last Changed Date: 2011-02-13 15:36:21 -0800 (Sun, 13 Feb 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.6) / i386 [ ERROR ] skipped  skipped 

Summary

Package: GEOquery
Version: 2.17.4
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD build GEOquery
StartedAt: 2011-03-17 13:47:09 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 13:49:25 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 135.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Setting options('download.file.method'='curl')
Found 36 entities...
GPL96 (1 of 36 entities)
GPL97 (2 of 36 entities)
GSM11805 (3 of 36 entities)
GSM11810 (4 of 36 entities)
GSM11814 (5 of 36 entities)
GSM11815 (6 of 36 entities)
GSM11823 (7 of 36 entities)
GSM11827 (8 of 36 entities)
GSM11830 (9 of 36 entities)
GSM11832 (10 of 36 entities)
GSM12067 (11 of 36 entities)
GSM12069 (12 of 36 entities)
GSM12075 (13 of 36 entities)
GSM12078 (14 of 36 entities)
GSM12079 (15 of 36 entities)
GSM12083 (16 of 36 entities)
GSM12098 (17 of 36 entities)
GSM12099 (18 of 36 entities)
GSM12100 (19 of 36 entities)
GSM12101 (20 of 36 entities)
GSM12105 (21 of 36 entities)
GSM12106 (22 of 36 entities)
GSM12268 (23 of 36 entities)
GSM12269 (24 of 36 entities)
GSM12270 (25 of 36 entities)
GSM12274 (26 of 36 entities)
GSM12283 (27 of 36 entities)
GSM12287 (28 of 36 entities)
GSM12298 (29 of 36 entities)
GSM12299 (30 of 36 entities)
GSM12300 (31 of 36 entities)
GSM12301 (32 of 36 entities)
GSM12399 (33 of 36 entities)
GSM12412 (34 of 36 entities)
GSM12444 (35 of 36 entities)
GSM12448 (36 of 36 entities)
Found 1 file(s)
GSE2553_series_matrix.txt.gz
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File stored at: 
/tmp/RtmpOSc3ZF/GPL1977.soft
File stored at: 
/tmp/RtmpOSc3ZF/GPL97.annot.gz
Loading required package: limma
File stored at: 
/tmp/RtmpOSc3ZF/GPL97.soft
File stored at: 
/tmp/RtmpOSc3ZF/GSM3922.soft
File stored at: 
/tmp/RtmpOSc3ZF/GSM3924.soft
File stored at: 
/tmp/RtmpOSc3ZF/GSM3926.soft
File stored at: 
/tmp/RtmpOSc3ZF/GSM3928.soft
File stored at: 
/tmp/RtmpOSc3ZF/GSM3930.soft
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) : 
  Running 'texi2dvi' on 'GEOquery.tex' failed.
Messages:
/usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
/usr/bin/texi2dvi: see GEOquery.log for errors.
Calls: <Anonymous> -> texi2dvi
Execution halted