maDB 1.23.0
Johannes Rainer
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/maDB | | Last Changed Rev: 50295 / Revision: 53255 | | Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | ERROR | ERROR |
* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/maDB.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maDB/DESCRIPTION’ ... OK
* this is package ‘maDB’ version ‘1.23.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘maDB’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.calcRegulations: no visible global function definition for
‘rpgsql.format.values’
.calculateDBRegulations.old: no visible global function definition for
‘rpgsql.format.values’
.dbUpdateAnnotation.old: no visible global function definition for
‘rpgsql.format.values’
.deleteTheExperiment: no visible global function definition for
‘rpgsql.format.values’
.processColumnNames: possible error in strsplit(column.names, split =
".", extended = FALSE, fixed = TRUE): unused argument(s) (extended =
FALSE)
.publishExperimentToDB: no visible global function definition for
‘rpgsql.format.values’
checkForDifferentAnnotation: no visible global function definition for
‘rpgsql.format.values’
dbGetAnnotation: no visible global function definition for
‘rpgsql.format.values’
dbGetExperimentInfo: no visible global function definition for
‘rpgsql.format.values’
dbGetGeneRegulationRanking: no visible global function definition for
‘rpgsql.format.values’
dbSearchSimilarPattern: no visible global function definition for
‘rpgsql.format.values’
dbUpdateAnnotation: no visible global function definition for
‘rpgsql.format.values’
getEDB: no visible global function definition for
‘rpgsql.format.values’
getMDB: no visible global function definition for
‘rpgsql.format.values’
getPK,Sample: no visible global function definition for
‘rpgsql.format.values’
loadFromDB,MadbSet: no visible global function definition for
‘rpgsql.format.values’
loadFromDB,Sample: no visible global function definition for
‘rpgsql.format.values’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* installing *source* package ‘maDB’ ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Rdbi
Creating a new generic function for "sort" in "maDB"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (maDB)