Package: genomes

Version: 1.7.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings genomes_1.7.0.tar.gz

StartedAt: 2011-02-24 19:52:00 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:52:44 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 43.6 seconds

RetCode: 0

Status:  OK

CheckDir: genomes.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/genomes.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘genomes’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

name	user	system	elapsed
doublingTime	0.192	0.004	0.196
genomes-lines	0.156	0.004	0.161
genomes-plot	0.148	0.000	0.151
genomes-print	0.084	0.000	0.085
genomes-subset	0.12	0.00	0.12
genomes-summary	0.020	0.000	0.019
genomes-update	0.004	0.000	0.003
genomes	0.156	0.004	0.158
genus	0.260	0.008	0.267
gold	1.316	0.020	1.335
hmp	0.068	0.000	0.070
image2	0.428	0.000	0.424
lenvs	0.02	0.00	0.02
leuks	0.116	0.000	0.117
like	0.080	0.000	0.083
lproks	0.208	0.000	0.209
plotby	0.236	0.012	0.248
species	0.300	0.004	0.302
table2	0.012	0.000	0.012
taxid2names	0.008	0.004	0.675
term2neighbor	0.052	0.000	1.081
term2summary	1.508	0.036	7.537
top	0.256	0.004	0.259
virus	0.072	0.004	1.113