Package: HTqPCR

Version: 1.5.3

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.5.3.tar.gz

StartedAt: 2011-02-24 20:17:36 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 20:18:41 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 64.9 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.5.3’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	3.656	0.020	3.730
cbind	0.028	0.000	0.028
changeCtLayout	0.028	0.000	0.030
clusterCt	0.724	0.012	0.740
filterCategory	0.088	0.008	0.096
filterCtData	0.200	0.000	0.201
heatmapSig	1.616	0.004	1.637
limmaCtData	0.912	0.004	0.918
mannwhitneyCtData	1.436	0.016	1.471
normalizeCtData	0.424	0.000	0.434
plotCVBoxes	0.176	0.004	0.181
plotCtArray	0.22	0.00	0.22
plotCtBoxes	0.044	0.000	0.046
plotCtCard	0.048	0.004	0.050
plotCtCategory	3.228	0.040	3.289
plotCtCor	0.044	0.004	0.049
plotCtDensity	0.032	0.004	0.034
plotCtHeatmap	2.981	0.024	3.015
plotCtHistogram	0.012	0.000	0.011
plotCtOverview	0.120	0.004	0.122
plotCtPCA	0.044	0.000	0.043
plotCtPairs	0.680	0.004	0.687
plotCtRQ	0.380	0.004	0.383
plotCtReps	0.136	0.000	0.135
plotCtScatter	0.024	0.000	0.024
plotCtSignificance	0.424	0.012	0.441
plotCtVariation	0.700	0.004	0.710
plotGenes	0.028	0.000	0.028
qPCRpros	0.000	0.004	0.004
qPCRraw	0.004	0.000	0.004
qPCRset-class	0.024	0.000	0.026
readCtData	0.052	0.000	0.053
setCategory	5.140	0.012	5.168
ttestCtData	1.028	0.000	1.027