Package: ppiData

Version: 0.1.14

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings ppiData_0.1.14.tar.gz

StartedAt: 2011-04-06 16:34:11 -0700 (Wed, 06 Apr 2011)

EndedAt: 2011-04-06 16:35:59 -0700 (Wed, 06 Apr 2011)

EllapsedTime: 108.5 seconds

RetCode: 0

Status:  OK

CheckDir: ppiData.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-data-experiment/meat/ppiData.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'ppiData' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

name	user	system	elapsed
Cagney2001BPGraph	0	0	0
Gavin2002BPGraph	0	0	0
Gavin2006bPGraph	0	0	0
Hazbun2003BPGraph	0	0	0
Ho2002BPGraph	0	0	0
Ito2001BPGraph	0	0	0
ItoCore2001BPGraph	0.01	0.00	0.02
ItoFull2001BPGraph	0	0	0
Krogan2004BPGraph	0	0	0
Krogan2006BPGraph	0	0	0
Tong2002BPGraph	0	0	0
Uetz2000BPGraph1	0.02	0.02	0.03
Uetz2000BPGraph2	0	0	0
Zhao2005BPGraph	0	0	0
bpExperimentNames	0	0	0
collectIntactPPIData	15.74	0.01	15.80
createBPList	0.01	0.00	0.01
intActPPIData	0.00	0.00	0.11
map2Systematic	0	0	0
ppipred	0.00	0.02	0.02
sWAC2Sys	0	0	0
stochasticBaits	0	0	0
tableList	0.02	0.00	0.01
twTableAPMS	0	0	0
twTableY2H	0	0	0
viableProteins	0.01	0.00	0.02
y2h	0	0	0
y2hSysGW	0.00	0.01	0.01