ind1KG 0.1.5
VJ Carey
| Snapshot Date: 2011-04-06 12:27:26 -0700 (Wed, 06 Apr 2011) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ind1KG | | Last Changed Rev: 1348 / Revision: 1510 | | Last Changed Date: 2010-10-13 19:41:41 -0700 (Wed, 13 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| petty | Mac OS X Snow Leopard (10.6.6) / i386 | OK | OK | OK |
Warning: unknown option '--keep-empty-dirs'
* checking for file 'ind1KG/DESCRIPTION' ... OK
* preparing 'ind1KG':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Rsamtools
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
pmin.int, rbind, rep.int, table
Loading required package: GenomicRanges
Loading required package: Biostrings
Download the knownGene table ... OK
Download the knownToLocusLink table ... OK
Extract the 'transcripts' data frame ... OK
Extract the 'splicings' data frame ... OK
Download and preprocess the 'chrominfo' data frame ...
Error: processing vignette 'ind1KG.Rnw' failed with diagnostics:
chunk 5 (label=lkgf)
Error in download.file(url, destfile, quiet = TRUE) :
cannot open URL 'http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/chromInfo.txt.gz'
In addition: Warning message:
In download.file(url, destfile, quiet = TRUE) :
unable to connect to 'hgdownload.cse.ucsc.edu' on port 80.
Execution halted