Package: hgu2beta7

Version: 1.2.2

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings hgu2beta7_1.2.2.tar.gz

StartedAt: 2011-04-06 14:30:11 -0700 (Wed, 06 Apr 2011)

EndedAt: 2011-04-06 14:31:49 -0700 (Wed, 06 Apr 2011)

EllapsedTime: 97.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: hgu2beta7.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hgu2beta7.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hgu2beta7/DESCRIPTION’ ... OK
* this is package ‘hgu2beta7’ version ‘1.2.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘hgu2beta7’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: annotate
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.7-data-experiment/meat/hgu2beta7.Rcheck/00check.log’
for details

* installing *source* package ‘hgu2beta7’ ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu2beta7)

name	user	system	elapsed
hgu2beta7ACCNUM	0.508	0.012	0.519
hgu2beta7CHR	0.324	0.000	0.324
hgu2beta7CHRLENGTHS	0	0	0
hgu2beta7CHRLOC	0.332	0.004	0.335
hgu2beta7ENZYME	0.320	0.004	0.324
hgu2beta7ENZYME2PROBE	0.008	0.000	0.006
hgu2beta7GENENAME	0.360	0.000	0.359
hgu2beta7GO	2.732	0.044	2.789
hgu2beta7GO2ALLPROBES	0.572	0.004	0.577
hgu2beta7GO2PROBE	0.100	0.000	0.098
hgu2beta7GRIF	0.428	0.004	0.451
hgu2beta7LOCUSID	0.156	0.000	0.162
hgu2beta7MAP	0.196	0.000	0.198
hgu2beta7OMIM	0.192	0.000	0.193
hgu2beta7ORGANISM	0.000	0.000	0.001
hgu2beta7PATH	0.196	0.000	0.195
hgu2beta7PATH2PROBE	0.004	0.000	0.005
hgu2beta7PMID	0.296	0.000	0.298
hgu2beta7PMID2PROBE	1.868	0.000	1.922
hgu2beta7REFSEQ	0.788	0.000	0.803
hgu2beta7SUMFUNC	0.372	0.008	0.378
hgu2beta7SYMBOL	0.688	0.004	0.692
hgu2beta7UNIGENE	0.292	0.000	0.293