Package: GenomicFeatures.Mmusculus.UCSC.mm9

Version: 0.1.3

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings GenomicFeatures.Mmusculus.UCSC.mm9_0.1.3.tar.gz

StartedAt: 2011-02-01 15:42:54 -0800 (Tue, 01 Feb 2011)

EndedAt: 2011-02-01 15:45:32 -0800 (Tue, 01 Feb 2011)

EllapsedTime: 157.8 seconds

RetCode: 0

Status:  OK

CheckDir: GenomicFeatures.Mmusculus.UCSC.mm9.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-data-experiment/meat/GenomicFeatures.Mmusculus.UCSC.mm9.Rcheck'
* using R version 2.12.1 (2010-12-16)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomicFeatures.Mmusculus.UCSC.mm9/DESCRIPTION' ... OK
* this is package 'GenomicFeatures.Mmusculus.UCSC.mm9' version '0.1.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomicFeatures.Mmusculus.UCSC.mm9' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package 'GenomicFeatures.Mmusculus.UCSC.mm9' ...
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: GenomicRanges
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomicFeatures.Mmusculus.UCSC.mm9)

name	user	system	elapsed
GenomicFeatures.Mmusculus.UCSC.mm9_dbconn	5.59	0.11	5.73
geneMouse	4.86	0.00	4.95