Package: tilingArray

Version: 1.28.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings tilingArray_1.28.0.tar.gz

StartedAt: 2011-04-07 09:02:56 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 09:04:16 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 80.1 seconds

RetCode: 0

Status:  OK

CheckDir: tilingArray.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/tilingArray.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tilingArray/DESCRIPTION' ... OK
* this is package 'tilingArray' version '1.28.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tilingArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'tilingArray' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c findsegments.c -o findsegments.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c sampleStep.c -o sampleStep.o
gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/tilingArray.Rcheck/tilingArray/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (tilingArray)

name	user	system	elapsed
PMindex	0	0	0
class-segmentation	0.15	0.00	0.16
comparisonPlot	0	0	0
costMatrix	0.10	0.00	0.09
findsegments	0	0	0
gffSub	0.67	0.03	0.72
normalizeByReference	0	0	0
otherStrand	0	0	0
plotAlongChrom	0.95	0.02	0.97
plotAlongChromLegend	0	0	0
plotSegmentationHeatmap	0.55	0.00	0.55
plotpenLL	0.02	0.00	0.01
posMin	0	0	0
qcPlots	0	0	0
readCel2eSet	0	0	0
sampleStep	0	0	0
segChrom	0	0	0
segment	0	0	0
segnf	0.62	0.00	0.63