Package: plateCore

Version: 1.8.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings plateCore_1.8.0.tar.gz

StartedAt: 2011-04-07 12:20:35 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 12:24:42 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 247.5 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/plateCore.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.2-01)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	4.75	0.02	4.80
applyControlGates-methods	15.39	0.01	15.45
compensate-methods	5.49	0.00	5.52
compensationSet	0.19	0.00	0.19
densityplot-methods	2.06	0.00	2.06
fixAutoFl-methods	7.11	0.02	7.35
flowPlate-class	3.64	0.00	3.73
flowPlate-method	3.56	0.00	3.61
fpbind-methods	8.16	0.01	8.22
getGroups-methods	1.52	0.00	1.53
gutterPlot-methods	1.39	0.00	1.39
mfiPlot-methods	15.61	0.04	15.71
on-methods	9.54	0.01	9.57
panel.densityplot.flowPlate	1.86	0.00	1.88
panel.xyplot.flowPlate	1.52	0.02	1.55
plateCore-package	3.47	0.01	3.51
plateSet-methods	3.17	0.00	3.19
plotPlate-methods	4.01	0.00	4.03
prepanel.densityplot.flowPlate	1.74	0.00	1.75
prepanel.xyplot.flowPlate	1.48	0.00	1.50
setControlGates-methods	3.66	0.00	3.67
summaryStats-methods	16.75	0.02	16.81
wellAnnotation-methods	1.56	0.00	1.57
xyplot-methods	1.52	0.01	1.53