Package: hopach

Version: 2.10.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings hopach_2.10.0.tar.gz

StartedAt: 2011-04-07 07:27:50 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 07:29:21 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 91.2 seconds

RetCode: 0

Status:  OK

CheckDir: hopach.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/hopach.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hopach/DESCRIPTION' ... OK
* this is package 'hopach' version '2.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hopach' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'hopach' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c Rdistances.c -o Rdistances.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c hdist.c -o hdist.o
gcc -shared -s -static-libgcc -o hopach.dll tmp.def Rdistances.o hdist.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/hopach.Rcheck/hopach/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "as.vector" in "hopach"
Creating a generic function from function "as.hdist"
Creating a new generic function for "as.matrix" in "hopach"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hopach)

name	user	system	elapsed
boot2fuzzy	9.58	0.00	9.87
bootplot	10.90	0.00	10.91
bootstrap	9.25	0.00	9.31
correlationordering	0.10	0.00	0.09
disscosangle	0	0	0
distancematrix	0.01	0.00	0.02
dplot	0.21	0.00	0.20
hdist-class	0.01	0.00	0.02
hopach	0.83	0.00	0.83
hopach.internal	0	0	0
hopach2tree	0.5	0.0	0.5
labelstomss	0.41	0.00	0.41
makeoutput	9.41	0.00	9.44
prune	3.11	0.00	3.12