Package: cellHTS

Version: 1.20.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings cellHTS_1.20.0.tar.gz

StartedAt: 2011-04-07 05:24:58 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 05:26:09 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 70.6 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/cellHTS.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS/DESCRIPTION’ ... OK
* this is package ‘cellHTS’ version ‘1.20.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘cellHTS’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.2-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS)

name	user	system	elapsed
Bscore	0.580	0.012	0.593
ROC	0.008	0.000	0.007
annotate	0.000	0.000	0.001
bdgpbiomart	0.276	0.000	0.275
configure	0	0	0
data-KcViab	0.232	0.004	0.235
data-KcViabSmall	0.008	0.000	0.007
getEnVisionRawData	0.036	0.000	0.035
getLibraryPlate	0.012	0.000	0.010
getMatrix	0.024	0.000	0.025
imageScreen	0.184	0.000	0.186
normalizeChannels	0.000	0.000	0.001
normalizePlates	0.008	0.000	0.011
oneRowPerId	0.008	0.000	0.005
plotPlateLibrary	0.860	0.000	0.861
plotSpatialEffects	0.468	0.000	0.467
print.cellHTS	0.012	0.000	0.011
readPlateData	0.148	0.000	0.148
screenMatch	0.308	0.000	0.308
summarizeChannels	0.004	0.000	0.000
summarizeReplicates	0.200	0.000	0.201
write.tabdel	0.020	0.000	0.018
writeReport	0.008	0.000	0.007
writeTab	0.012	0.000	0.013