Package: biocDatasets

Version: 1.6.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings biocDatasets_1.6.0.tar.gz

StartedAt: 2011-04-07 05:06:03 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 05:07:17 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 74.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: biocDatasets.Rcheck

Warnings: 1

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/biocDatasets.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biocDatasets/DESCRIPTION’ ... OK
* this is package ‘biocDatasets’ version ‘1.6.0’
* checking package name space information ...Warning: unknown namespace directive: importMethodFrom("Biostrings", "nchar")
 OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘biocDatasets’ can be installed ... WARNING
Found the following significant warnings:
  Warning: unknown namespace directive: importMethodFrom("Biostrings", "nchar")
  Warning: unknown namespace directive: importMethodFrom("Biostrings", "nchar")
See ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/biocDatasets.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: lattice
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/biocDatasets.Rcheck/00check.log’
for details

* installing *source* package ‘biocDatasets’ ...
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Warning: unknown namespace directive: importMethodFrom("Biostrings", "nchar")
** help
*** installing help indices
** building package indices ...
Warning: unknown namespace directive: importMethodFrom("Biostrings", "nchar")
** testing if installed package can be loaded

* DONE (biocDatasets)

name	user	system	elapsed
createProbeCoords	0.284	0.008	0.290
expression_arraywide	0.220	0.020	0.249
msubseq	0.216	0.000	0.219
randomDNASequences	0.000	0.000	0.002
randomIRanges	0.016	0.000	0.014
tilingProbes	0.032	0.004	0.038