Package: affypdnn

Version: 1.24.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings affypdnn_1.24.0.tar.gz

StartedAt: 2011-04-07 05:39:54 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 05:43:37 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 223.1 seconds

RetCode: 0

Status:  OK

CheckDir: affypdnn.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/affypdnn.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affypdnn/DESCRIPTION' ... OK
* this is package 'affypdnn' version '1.24.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affypdnn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'affypdnn' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
registering new summary method 'pdnn'.
registering new pmcorrect method 'pdnn' and 'pdnnpredict'.

* DONE (affypdnn)

name	user	system	elapsed
chiptype.pdnn.params	0	0	0
expressopdnn	67.64	4.20	72.40
find.params.pdnn	20.11	0.36	20.59
generateExprVal.method.pdnn	56.58	2.59	59.42
matplotProbesPDNN	0	0	0
params.dilution	0.90	0.04	0.95
pdnn.params.chiptype	0	0	0
transform.ProbeSet	1.15	0.00	1.18