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Package 18/419HostnameOS / ArchBUILDCHECKBUILD BIN
affyPLM 1.26.1
Ben Bolstad
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/affyPLM
Last Changed Rev: 53251 / Revision: 54588
Last Changed Date: 2011-02-24 09:41:06 -0800 (Thu, 24 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]

Summary

Package: affyPLM
Version: 1.26.1
Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD INSTALL --build --library=affyPLM.buildbin-libdir affyPLM_1.26.1.tar.gz
StartedAt: 2011-04-07 13:54:40 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 13:55:06 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 26.2 seconds
RetCode: 0
Status:  OK  
PackageFile: affyPLM_1.26.1.zip
PackageFileSize: 5.075 MiB

Command output

* installing *source* package 'affyPLM' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c LESN.c -o LESN.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_avg_log.c -o PLM_avg_log.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_biweight.c -o PLM_biweight.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_log_avg.c -o PLM_log_avg.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_medianPM.c -o PLM_medianPM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_median_logPM.c -o PLM_median_logPM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_medianpolish.c -o PLM_medianpolish.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c PLM_modelmatrix.c -o PLM_modelmatrix.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c SCAB.c -o SCAB.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c chipbackground.c -o chipbackground.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c common_types.c -o common_types.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c do_PLMrlm.c -o do_PLMrlm.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c do_PLMrma.c -o do_PLMrma.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c do_PLMthreestep.c -o do_PLMthreestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c idealmismatch.c -o idealmismatch.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c lm_threestep.c -o lm_threestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c matrix_functions.c -o matrix_functions.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c nthLargestPM.c -o nthLargestPM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c preprocess.c -o preprocess.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c psi_fns.c -o psi_fns.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c qnorm_probeset.c -o qnorm_probeset.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c read_rmaexpress.c -o read_rmaexpress.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c rlm_PLM.c -o rlm_PLM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c rlm_threestep.c -o rlm_threestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c rma_PLM.c -o rma_PLM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c rma_common.c -o rma_common.o
rma_common.c: In function 'median':
rma_common.c:60:7: warning: unused variable 'i'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c scaling.c -o scaling.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c threestep.c -o threestep.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c threestep_PLM.c -o threestep_PLM.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c threestep_common.c -o threestep_common.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c threestep_summary.c -o threestep_summary.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c threestep_summary_methods.c -o threestep_summary_methods.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.7-bioc/R/include" -DHAVE_ZLIB  -I"D:/biocbld/bbs-2.7-bioc/R/library/preprocessCore/include"      -O2 -Wall  -std=gnu99 -c transfns.c -o transfns.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o affyPLM.dll tmp.def LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -lgfortran -LD:/biocbld/bbs-2.7-bioc/R/bin/x64 -lRlapack -LD:/biocbld/bbs-2.7-bioc/R/bin/x64 -lRblas -lRzlib -LD:/biocbld/bbs-2.7-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.7-bioc/meat/affyPLM.buildbin-libdir/affyPLM/libs/x64
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "affyPLM"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affyPLM' as affyPLM_1.26.1.zip

* DONE (affyPLM)