Package: RCytoscape

Version: 1.0.1

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings RCytoscape_1.0.1.tar.gz

StartedAt: 2011-02-22 08:37:44 -0800 (Tue, 22 Feb 2011)

EndedAt: 2011-02-22 08:43:03 -0800 (Tue, 22 Feb 2011)

EllapsedTime: 319.3 seconds

RetCode: 0

Status:  OK

CheckDir: RCytoscape.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/RCytoscape.Rcheck’
* using R version 2.12.1 (2010-12-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCytoscape/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCytoscape’ version ‘1.0.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RCytoscape’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘RCytoscape_unit_tests.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RCytoscape’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RCytoscape)

name	user	system	elapsed
CytoscapeWindow	0.044	0.000	0.187
CytoscapeWindowClass-class	0.060	0.004	0.133
clearMsg	0.288	0.008	5.360
clearSelection	0.240	0.000	4.355
cy2.edge.names	0.02	0.00	0.02
destroyAllWindows	0.188	0.000	0.922
destroyWindow	0.040	0.000	0.077
displayGraph	0.212	0.008	3.647
dockPanel	0.068	0.000	0.121
eda	0.028	0.000	0.060
eda.names	0.036	0.000	0.144
firstNeighbors	0.036	0.000	0.057
floatPanel	0.064	0.004	0.204
getAllEdges	0.028	0.008	0.080
getAllNodes	0.044	0.000	0.084
getArrowShapes	0.044	0.000	0.139
getAttributeClassNames	0.032	0.000	0.102
getGraph	0.040	0.004	0.202
getLayoutNames	0.048	0.000	0.176
getLineStyles	0.048	0.000	0.675
getNodeShapes	0.048	0.004	0.177
getSelectedNodeCount	0.260	0.000	3.657
getSelectedNodes	0.256	0.004	3.602
getWindowCount	0.136	0.000	0.470
getWindowList	0.112	0.000	0.167
hidePanel	0.072	0.000	0.482
hideSelectedNodes	0.104	0.000	0.693
initEdgeAttribute	0.004	0.000	0.003
initNodeAttribute	0.004	0.000	0.002
layout	0.220	0.004	4.681
makeRandomGraph	0.008	0.000	0.011
makeSimpleGraph	0.024	0.000	0.028
msg	0.196	0.004	5.424
noa	0.032	0.000	0.030
noa.names	0.028	0.008	0.146
ping	0.044	0.000	0.281
redraw	0.044	0.000	0.157
selectNodes	0.076	0.004	0.280
sendEdgeAttributes	0.096	0.000	4.244
sendEdgeAttributesDirect	0.052	0.004	1.717
sendEdges	0.064	0.000	1.095
sendNodeAttributes	0.104	0.000	0.235
sendNodeAttributesDirect	0.060	0.000	0.153
sendNodes	0.060	0.000	0.284
setDefaultEdgeColor	0.248	0.000	5.665
setDefaultEdgeLineWidth	0.256	0.000	3.544
setDefaultNodeBorderColor	0.252	0.004	3.636
setDefaultNodeBorderWidth	0.264	0.004	4.547
setDefaultNodeColor	0.244	0.012	4.666
setDefaultNodeFontSize	0.252	0.016	3.852
setDefaultNodeLabelColor	0.248	0.004	4.708
setDefaultNodeShape	0.336	0.012	3.809
setDefaultNodeSize	0.236	0.000	3.640
setEdgeColorRule	0.068	0.004	1.181
setEdgeLineStyleRule	0.064	0.000	1.205
setEdgeSourceArrowColorRule	0.048	0.004	1.218
setEdgeSourceArrowRule	0.060	0.004	1.192
setEdgeTargetArrowColorRule	0.056	0.000	1.145
setEdgeTargetArrowRule	0.064	0.000	1.216
setEdgeTooltipRule	0.224	0.004	5.865
setGraph	0.040	0.000	0.199
setNodeBorderColorRule	0.10	0.00	2.68
setNodeColorRule	0.100	0.004	2.266
setNodeLabelRule	0.336	0.008	6.452
setNodeShapeRule	0.064	0.004	2.275
setNodeSizeRule	0.272	0.008	7.625
setNodeTooltipRule	0.284	0.008	7.603
setPosition	0.228	0.004	4.762
sfn	0.340	0.004	3.802
unhideAll	0.276	0.004	3.640
version	0.048	0.000	0.236