Package: gene2pathway

Version: 1.8.1

Command: chmod a+r gene2pathway -R && E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs gene2pathway

StartedAt: 2011-03-31 03:52:01 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 03:54:11 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 130.2 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

Warning: unknown option '--keep-empty-dirs'
* checking for file 'gene2pathway/DESCRIPTION' ... OK
* preparing 'gene2pathway':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: kernlab
Loading required package: biomaRt
Loading required package: KEGGSOAP
Loading required package: RBGL
Loading required package: graph
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: org.Dm.eg.db
Loading required package: DBI
Loading required package: keggorthology
Loading required package: hgu95av2.db
Loading required package: org.Hs.eg.db

Error: processing vignette 'gene2pathway.Rnw' failed with diagnostics:
 chunk 4 
Error : cannot allocate vector of size 13.4 Mb
In addition: Warning messages:
1: In load(zfile, envir = envir) :
  Reached total allocation of 1535Mb: see help(memory.size)
2: In load(zfile, envir = envir) :
  Reached total allocation of 1535Mb: see help(memory.size)
3: In load(zfile, envir = envir) :
  Reached total allocation of 1535Mb: see help(memory.size)
4: In load(zfile, envir = envir) :
  Reached total allocation of 1535Mb: see help(memory.size)
5: In load(zfile, envir = envir) :
  Reached total allocation of 1535Mb: see help(memory.size)
6: In load(zfile, envir = envir) :
  Reached total allocation of 1535Mb: see help(memory.size)
Execution halted