Package: dualKS

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch dualKS_1.10.0.tar.gz

StartedAt: 2011-03-31 05:31:02 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 05:32:09 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 67.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: dualKS.Rcheck

Warnings: 1

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/dualKS.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dualKS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘dualKS’ version ‘1.10.0’
* checking package name space information ...Warning: unknown namespace directive: importClasses(methods, base)
 OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘dualKS’ can be installed ... WARNING
Found the following significant warnings:
  Warning: unknown namespace directive: importClasses(methods, base)
  Warning: unknown namespace directive: importClasses(methods, base)
  Warning: unknown namespace directive: importClasses(methods, base)
See ‘/Users/biocbuild/bbs-2.7-bioc/meat/dualKS.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/Users/biocbuild/bbs-2.7-bioc/meat/dualKS.Rcheck/00check.log’
for details

* installing *source* package ‘dualKS’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Warning: unknown namespace directive: importClasses(methods, base)
Creating a new generic function for "summary" in "dualKS"
Creating a new generic function for "plot" in "dualKS"
** help
*** installing help indices
** building package indices ...
Warning: unknown namespace directive: importClasses(methods, base)
Warning: unknown namespace directive: importClasses(methods, base)
** testing if installed package can be loaded

* DONE (dualKS)

name	user	system	elapsed
KS	4.818	0.028	4.918
dksClassify	2.507	0.030	2.581
dksCustomClass	0.041	0.002	0.044
dksPerm	2.511	0.032	2.573
dksSelectGenes	2.452	0.029	2.528
dksTrain	2.504	0.034	2.636
dksWeights	4.278	0.024	4.689