crlmm 1.8.11
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
| Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/crlmm | | Last Changed Rev: 52516 / Revision: 54281 | | Last Changed Date: 2011-02-06 17:30:47 -0800 (Sun, 06 Feb 2011) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'crlmm' ...
Using auto-selected zip option '--use-zip-data'
** libs
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include" -O3 -Wall -std=gnu99 -c gtypeCaller.c -o gtypeCaller.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include" -O3 -Wall -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include" -O3 -Wall -std=gnu99 -c trimmed.c -o trimmed.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include" -O3 -Wall -std=gnu99 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore'
gcc -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -LE:/biocbld/bbs-2.7-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
================================================================================
Welcome to oligoClasses version 1.12.2
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
- Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
- Load 'ff'
- Load 'snow'
- Use options(cluster=makeCluster(...))
================================================================================
Loading package bit1.1-6
package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Loading package ff2.2-1
- getOption("fftempdir")=="E:/biocbld/bbs-2.7-bioc/tmpdir/RtmphSQNSh"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16095641.6 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==804782080 -- consider a different value for tuning your system
Creating a new generic function for "lines" in "crlmm"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to crlmm version 1.8.11
* MD5 sums
packaged installation of 'crlmm' as crlmm_1.8.11.zip
* DONE (crlmm)