Package: cellHTS

Version: 1.20.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings cellHTS_1.20.0.tar.gz

StartedAt: 2011-03-31 05:53:14 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 05:54:43 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 89.2 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/cellHTS.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS/DESCRIPTION' ... OK
* this is package 'cellHTS' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'cellHTS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS)

name	user	system	elapsed
Bscore	0.8	0.0	0.8
ROC	0.02	0.00	0.02
annotate	0	0	0
bdgpbiomart	0.32	0.00	0.32
configure	0	0	0
data-KcViab	0.27	0.01	0.29
data-KcViabSmall	0.01	0.00	0.01
getEnVisionRawData	0.07	0.03	0.13
getLibraryPlate	0.01	0.00	0.01
getMatrix	0.00	0.02	0.02
imageScreen	0.14	0.02	0.15
normalizeChannels	0	0	0
normalizePlates	0.02	0.01	0.04
oneRowPerId	0.01	0.00	0.01
plotPlateLibrary	1.82	0.00	1.81
plotSpatialEffects	1.00	0.02	1.02
print.cellHTS	0.01	0.00	0.01
readPlateData	0.24	0.01	0.25
screenMatch	0.33	0.00	0.33
summarizeChannels	0	0	0
summarizeReplicates	0.07	0.00	0.08
write.tabdel	0.14	0.00	0.14
writeReport	0.02	0.00	0.02
writeTab	0.11	0.00	0.11