Package: Rmagpie

Version: 1.6.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings Rmagpie_1.6.0.tar.gz

StartedAt: 2011-03-31 10:20:20 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 10:22:40 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 140.3 seconds

RetCode: 0

Status:  OK

CheckDir: Rmagpie.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/Rmagpie.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rmagpie/DESCRIPTION' ... OK
* this is package 'Rmagpie' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rmagpie' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFeatureSelectionOptions<-,assessment: no visible global function
  definition for 'getNoOfOptions<-'
getFeatureSelectionOptions<-,assessment: no visible global function
  definition for 'getNoModels<-'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'Rmagpie' ...
** R
** data
** demo
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rmagpie)

name	user	system	elapsed
classifyNewSamples-methods	2.42	0.01	2.44
experiment-class	0.08	0.00	0.08
finalClassifier-class	0.10	0.00	0.11
findFinalClassifier-methods	0.29	0.00	0.28
geneSubsets-class	0.01	0.00	0.01
getDataset-methods	0.02	0.00	0.02
getFeatureSelectionOptions-methods	0.01	0.00	0.02
getFinalClassifier	0.24	0.05	0.28
getResults-methods	7.65	0.00	7.67
plotErrorsFoldTwoLayerCV-methods	7.56	0.00	7.57
plotErrorsRepeatedOneLayerCV	1.36	0.00	1.37
plotErrorsSummaryOneLayerCV-methods	1.38	0.00	1.38
rankedGenesImg-methods	0	0	0
runOneLayerExtCV-methods	1.16	0.00	1.16
runTwoLayerExtCV-methods	14.11	0.00	14.11
setDataset-methods	0	0	0
setFeatureSelectionOptions-methods	0.02	0.00	0.01
thresholds-class	0	0	0
vV70genes	0.01	0.00	0.02