Package: ExpressionView

Version: 1.2.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings ExpressionView_1.2.0.tar.gz

StartedAt: 2011-03-31 05:39:11 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 05:41:00 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 108.7 seconds

RetCode: 0

Status:  OK

CheckDir: ExpressionView.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/ExpressionView.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ExpressionView/DESCRIPTION’ ... OK
* this is package ‘ExpressionView’ version ‘1.2.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ExpressionView’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘ExpressionView’ ...
** libs
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c order.cpp -o order.o
g++ -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c orderclusters.cpp -o orderclusters.o
g++ -shared -L/usr/local/lib64 -o ExpressionView.so order.o orderclusters.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/ExpressionView.Rcheck/ExpressionView/libs
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
Loading required package: DBI
in method for ‘ExportEV’ with signature ‘biclusters="Biclust"’: no definition for class "Biclust"
Loading required package: eisa
Loading required package: isa2
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: Category
Loading required package: genefilter
Loading required package: biclust
Loading required package: MASS

Attaching package: 'MASS'

The following object(s) are masked from 'package:genefilter':

    area

Loading required package: grid
Loading required package: colorspace
Loading required package: lattice
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ExpressionView)

name	user	system	elapsed
ExportEV	18.333	0.140	18.510
LaunchEV	0	0	0
OrderEV	7.728	0.012	7.741