Package: CSAR

Version: 1.2.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings CSAR_1.2.0.tar.gz

StartedAt: 2011-03-31 07:21:39 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 07:22:44 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 64.6 seconds

RetCode: 0

Status:  OK

CheckDir: CSAR.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/CSAR.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CSAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CSAR' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CSAR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'CSAR' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c CSAR.c -o CSAR.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o CSAR.dll tmp.def CSAR.o -LD:/biocbld/BBS-2˜1.7-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.7-bioc/meat/CSAR.Rcheck/CSAR/libs/x64
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CSAR)

name	user	system	elapsed
CSAR-package	1.78	0.02	1.80
ChIPseqScore	0.41	0.00	0.41
distance2Genes	0.50	0.00	0.53
genesWithPeaks	0.53	0.01	0.54
getPermutatedWinScores	1.67	0.03	1.71
getThreshold	1.85	0.02	1.86
loadMappedReads	0	0	0
mappedReads2Nhits	0.2	0.0	0.2
permutatedWinScores	1.61	0.06	1.67
sampleSEP3_test	0.00	0.00	0.03
score2wig	0.42	0.02	0.44
sigWin	0.52	0.00	0.52