Package: AnnotationDbi

Version: 1.12.1

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings AnnotationDbi_1.12.1.tar.gz

StartedAt: 2011-03-31 05:14:44 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 05:27:32 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 768.1 seconds

RetCode: 0

Status:  OK

CheckDir: AnnotationDbi.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.12.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (AnnotationDbi)

name	user	system	elapsed
AnnDbBimap-envirAPI	2.18	0.20	2.37
AnnDbObj-class	21.83	31.66	367.66
AnnDbPkg-checker	156.52	5.61	246.74
AnnDbPkg-maker	0.09	0.00	0.09
Bimap-direction	10.24	0.03	10.27
Bimap-keys	2.96	0.01	2.98
Bimap-toTable	3.71	0.05	3.86
Bimap	5.33	0.00	5.33
BimapFiltering	0.69	0.01	0.71
BimapFormatting	1.64	0.00	1.66
GOFrame	6.47	1.57	15.78
GOTerms-class	0.01	0.00	0.02
KEGGFrame	0.86	0.01	0.89
available.db0pkgs	0.10	0.00	0.11
createSimpleBimap	0.51	0.02	0.53
getProbeDataAffy	0	0	0
getProbeData_1lq	0	0	0
inpIDMapper	0	0	0
makeProbePackage	9.59	0.06	11.19
make_eg_to_go_map	0.58	0.00	0.58
print.probetable	1.20	0.00	1.22
sqlForge-makeCHIPDB	0	0	0
sqlForge-popDB	0	0	0
sqlForge-wrapDBPackages	0	0	0
toSQLStringSet	0	0	0
unlist2	0.55	0.02	0.56