PGSEA 1.20.1
Karl Dykema
| Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/PGSEA | | Last Changed Rev: 51562 / Revision: 54281 | | Last Changed Date: 2010-12-15 15:15:34 -0800 (Wed, 15 Dec 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
Warning: unknown option '--keep-empty-dirs'
* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: org.Hs.eg.db
Loading required package: DBI
Loading required package: GO.db
Loading required package: GSEABase
Loading required package: annotate
Loading required package: graph
Setting options('download.file.method'='curl')
Found 1 file(s)
GSE7023_series_matrix.txt.gz
Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
chunk 1
Error in file(con, "r") : cannot open the connection
In addition: Warning messages:
1: In download.file(sprintf("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/%s/%s", :
download had nonzero exit status
2: In file(con, "r") :
cannot open file 'D:\biocbld\bbs-2.7-bioc\tmpdir\RtmpiNofAb/GSE7023_series_matrix.txt.gz': No such file or directory
Execution halted