* checking for file 'simulatorAPMS/DESCRIPTION' ... OK
* preparing 'simulatorAPMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'simulatorAPMS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from 'package:graph':
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from 'package:AnnotationDbi':
head, tail
The following object(s) are masked from 'package:utils':
head, tail
Loading required package: apComplex
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
*** Deprecation warning ***:
The package 'simulatorAPMS' is deprecated and will not be supported after Bioconductor release 2.4. The methods and functions will be ported over to ppiStats within the next two releases.
* DONE (simulatorAPMS)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'simulatorAPMS_1.20.0.tar.gz'